Tobamovirus

Molecular biology

VIRION

Non-enveloped, rigid helical rods with a helical symetry. Virion is about 18 nm in diameter, and 300-310 nm in lenght.

GENOME

Monopartite, linear, ssRNA(+) genome of 6.3-6.5 kb. The 3’-terminus has a tRNA-like structure. The 5’ terminus has a methylated nucleotide cap (m7G5’pppG).

GENE EXPRESSION

The virion RNA is infectious and serves as both the genome and viral messenger RNA. The genome encodes at least four proteins. The methyltransferase/helicase (mt/hel) and RNA-dependent RNA polymerase (RdRp) involved in virus replication are in the 5’ half of the genome. The first one is directly translated from genomic RNA, and the second one is produced by readthrough of the termination codon of the first gene. The other two, a movement protein and the capsid protein are expressed from separate subgenomic mRNAs.

REPLICATION

CYTOPLASMIC

  1. Virus penetrates into the host cell.
  2. Uncoating, and release of the viral genomic RNA into the cytoplasm.
  3. Genomic RNA is translated to produce the two proteins necessary for Rreplication.
  4. A negative-sense complementary ssRNA is synthesized using the genomic RNA as a template.
  5. New genomic RNA is synthesized using the negative-sense RNA as a template, as well as subgenomic RNA encoding for MP and CP proteins.
  6. Assembly of new virus particles.

Matching UniProtKB/Swiss-Prot entries

78 entries grouped by species (reorder by proteins)

All proteins are shown (view only 57 complete proteome entries)

3 entries

Cucumber green mottle mosaic virus (strain watermelon SH) (CGMMV)

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COAT_CGMVSCoat protein
MOVP_CGMVSMovement protein (Cell-to-cell transport protein) (28.8 kDa protein)
RDRP_CGMVSReplicase large subunit (EC 2.7.7.48) (186 kDa protein)

2 entries

Cucumber green mottle mosaic virus (strain watermelon W) (CGMMV)

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COAT_CGMVWCoat protein
MOVP_CGMVWMovement protein (Cell-to-cell transport protein) (28.8 kDa protein)

2 entries

Odontoglossum ringspot virus (isolate Japan) (ORSV)

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COAT_ORSVJCoat protein
MOVP_ORSVJMovement protein (Cell-to-cell transport protein) (33.4 kDa protein)

3 entries

Odontoglossum ringspot virus (isolate Korean Cy) (ORSV-Cy)

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COAT_ORSVCCoat protein
MOVP_ORSVCMovement protein (Cell-to-cell transport protein) (33.4 kDa protein)
RDRP_ORSVCReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Odontoglossum ringspot virus (isolate Singapore 1) (ORSV)

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COAT_ORSVSCoat protein
MOVP_ORSVSMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_ORSVSReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Paprika mild mottle virus (PaMMV)


COAT_PMMVCoat protein

1 entry

Pepper mild mottle virus (strain Italian) (PMMV-I)


COAT_PMMVICoat protein

3 entries

Pepper mild mottle virus (strain Japan) (PMMV-J)

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COAT_PMMVJCoat protein
MOVP_PMMVJMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_PMMVJReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Pepper mild mottle virus (strain P0) (PMMV)


COAT_PMMV0Coat protein

1 entry

Pepper mild mottle virus (strain P1) (PMMV)


COAT_PMMV1Coat protein

1 entry

Pepper mild mottle virus (strain P2) (PMMV)


COAT_PMMV2Coat protein

3 entries

Pepper mild mottle virus (strain Spain) (PMMV-S)

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COAT_PMMVSCoat protein
MOVP_PMMVSMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_PMMVSReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

2 entries

Ribgrass mosaic virus (RMV)

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COAT_RMVCoat protein
MOVP_RMVMovement protein (Cell-to-cell transport protein) (30 kDa protein)

1 entry

Ribgrass mosaic virus (strain CAB) (RMV)


COAT_RMVCACoat protein

1 entry

Ribgrass mosaic virus (strain Hr) (RMV) (TMV strain Holmes ribgrass)

3 entries

Sunn-hemp mosaic virus (SHMV) (TMV strain cowpea)

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COAT_SHMVCoat protein
MOVP_SHMVMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_SHMVReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Tobacco mild green mosaic virus (TMGMV) (TMV strain U2)

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COAT_TMGMVCoat protein
MOVP_TMGMVMovement protein (Cell-to-cell transport protein) (28.5 kDa protein)
RDRP_TMGMVReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Tobacco mosaic virus (strain 06) (TMV-06)


COAT_TMV06Coat protein

3 entries

Tobacco mosaic virus (strain B935A) (TMV)

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COAT_TMVBCoat protein
MOVP_TMVBMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TMVBReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Tobacco mosaic virus (strain Dahlemense) (TMV)


COAT_TMVDACoat protein

1 entry

Tobacco mosaic virus (strain ER) (TMV)


COAT_TMVERCoat protein

1 entry

Tobacco mosaic virus (strain Kokubu) (TMV)


COAT_TMVKOCoat protein

3 entries

Tobacco mosaic virus (strain Korean NC 82) (TMV)

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COAT_TMVKRCoat protein
MOVP_TMVKRMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TMVKRReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Tobacco mosaic virus (strain O) (TMV)


COAT_TMVOCoat protein

3 entries

Tobacco mosaic virus (strain OM) (TMV)

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COAT_TMVOMCoat protein
MOVP_TMVOMMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TMVOMReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Tobacco mosaic virus (strain Rakkyo) (TMV-R)

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COAT_TMVRACoat protein
MOVP_TMVRAMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TMVRAReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Tobacco mosaic virus (strain vulgare) (TMV) (Tobacco mosaic virus (strain U1))

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COAT_TMVCoat protein
MOVP_TMVMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TMVReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Tobamovirus Ob

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COAT_TMOBCoat protein
MOVP_TMOBMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TMOBReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Tomato mosaic virus (strain Kazakh K1) (ToMV) (TMV strain K1)

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COAT_TOMK1Coat protein
MOVP_TOMK1Movement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TOMK1Replicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Tomato mosaic virus (strain Kazakh K2) (ToMV) (TMV strain K2)

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COAT_TOMK2Coat protein
MOVP_TOMK2Movement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TOMK2Replicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Tomato mosaic virus (strain Korean) (ToMV)


COAT_TOMKOCoat protein

3 entries

Tomato mosaic virus (strain L) (ToMV) (TMV strain tomato)

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COAT_TOMLCoat protein
MOVP_TOMLMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TOMLReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

1 entry

Tomato mosaic virus (strain LII) (ToMV)


MOVP_TOML2Movement protein (Cell-to-cell transport protein) (30 kDa protein)

1 entry

Tomato mosaic virus (strain LIIa) (ToMV)


MOVP_TOMLAMovement protein (Cell-to-cell transport protein) (30 kDa protein)

3 entries

Tomato mosaic virus (strain S-1) (ToMV)

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COAT_TOMS1Coat protein
MOVP_TOMS1Movement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TOMS1Replicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Turnip vein-clearing virus (TVCV)

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COAT_TVCVCoat protein
MOVP_TVCVMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_TVCVReplicase large subunit (EC 2.7.7.48) (183 kDa protein)

3 entries

Youcai mosaic virus (YoMV) (Oilseed rape mosaic virus)

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COAT_YOMVCoat protein
MOVP_YOMVMovement protein (Cell-to-cell transport protein) (30 kDa protein)
RDRP_YOMVReplicase large subunit (EC 2.7.7.48) (182 kDa protein)